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PyDecNef 2.0 Documentation

main.sh

PyDecNef 2.0 Documentation

INTRODUCTION
fMRI SETUP (example)
pyDecNef 2.0 components
pyDecNef 2.0 components
- 1 server
  1 server
  - 1 model training
    1 model training
    
    1 scripts
    1 scripts
    
    1 arranging data
    1 arranging data
    
    1_receive_behavior_logs
    
    2_divide_raw_fmri_data_to_runs
    
    server_client_connexion
    
    2 preprocessing
    2 preprocessing
    
    1_generate_example_func
    
    2_preprocessing_raw
    
    3_stack_preprocessed_vols
    
    4_extract_vols_of_interest
    
    5_stack_vols_of_interest_preprocess_whole_brain5_stack_vols_of_interest
    
    6_stack_vols_of_interest_preprocess_ROImasking
    
    3 braindecoder
    3 braindecoder
    
    1_training_and_evaluating_models_wholebrain
    
    2_training_and_evaluating_models_masked
  - 2 neurofeedback
    2 neurofeedback
    
    config.ini
    
    1 realtime fMRI
    1 realtime fMRI
    
    main
    
    main.sh
    
    Modules
    Modules
    
    Classes
    Classes
    
    classes
    
    Config
    Config
    
    connection_config
    
    exp_config
    
    listener
    
    shared_instances
    
    Pipelines
    Pipelines
    
    corregistration_pipeline
    
    decoding_coadaptation
    
    preproc_vol_to_timeseries_pipeline
    
    trial_decoding_pipeline
    
    2 MRI simulator
    2 MRI simulator
    
    generate
- 2 client
  2 client
  - 1 training
    1 training
    
    1 sending behavior logs
    
    Server client connexion
  - 2.neurofeedback
    2.neurofeedback
    
    Connection config

main.sh

This is the bash script that iniate the real time fMRI neurofeedback